Neural Basis of Confidence in Decisions
How does the brain make decisions and assess confidence?
We pioneered a computational behavioral approach to isolate distinct cognitive processes and translate them across species. By establishing a rigorous framework linking human confidence reports to statistical decision confidence, we identified the first neural correlates of confidence in animals (Kepecs et al., 2008, Nature). Our studies revealed that orbitofrontal cortex neurons encode a modality-general confidence signal that predicts confidence-driven behaviors (Masset et al., 2020, Cell). We also discovered a novel confidence-guided learning mechanism conserved across species, underscoring its broad behavioral relevance (Lak et al., 2020, eLife).
In ongoing we are decoding cortical algorithms underlying confidence computation directly from spikes, recorded using high density electrophysiology, using advanced machine learning techniques. We are imaging orbitofrontal populations to identify fundamental cortical algorithms implemented by specific cell types to gain insights into how these cognitive operations are implemented.
Selected Publications
Rats use memory confidence to guide decisions
Joo HR, Liang H, Chung JE, Geaghan-Breiner C, Fan JL, Nachman BP, Kepecs A, Frank LM.. Current Biology (2021) Oct 25;31(20):4571-83
Behavior- and Modality-General Representation of Confidence in Orbitofrontal Cortex
Masset P, Ott T, Lak A, Hirokawa J, Kepecs A.. Cell (2020) Jul 9;182(1):112-126.e18. PMID: 32504542
PDF
DOI
Reinforcement biases subsequent perceptual decisions when confidence is low, a widespread behavioral phenomenon
Lak A, Hueske E, Hirokawa J, Masset P, Ott T, Urai AE, Donner TH, Carandini M, Tonegawa S, Uchida N, Kepecs A.. Elife (2020) Apr 15;9:e49834. doi: 10.7554/eLife.49834
DOI
Frontal cortex neuron types categorically encode single decision variables
Hirokawa J, Vaughan A, Ott, T., Masset, P. & Kepecs A. Nature (2019) Dec;576(7787):446-451. doi: 10.1038/s41586-019-1816-9
DOI
Neural correlates and behavioral impact of decision confidence
Kepecs, A., Uchida, N., Zariwala, H., Mainen, Z.F.. Nature (2008) 455 (7210):227-31. PMID: 18690210
Cortical Circuits and Interneurons
How do specific cell types contribute to cortical processing and behavior?
We identified cell-type-specific cortical principles that advance our understanding of cortical information processing. We found that VIP-expressing interneurons mediate disinhibitory control through a conserved circuit across cortical regions (Pi et al., 2014, Nature). Additionally, we discovered that VIP interneurons are activated by both reward and punishment, regulating cortical processing and plasticity (Szadai et al., 2020, eLife). These findings link the activity of specific neural types to behavioral decisions.
Currently we are probing the relationship between cortical interneurons and neuromodulators using miniscope imaging to observe large populations of neurons during behavior and to map to transcriptomics. We are exploring how specific cell types implement fundamental cortical algorithms.
Selected Publications
Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment
Z Szadai, HJ Pi, Q Chevy, K Ócsai, DF Albeanu, B Chiovini, G Szalay, A Kepecs*, B Rozsa*. Elife (2022) 11, E78815
Cortical interneurons that specialize in disinhibitory control
Pi, H.J., Hangya, B., Kvitsiani, D., Sanders, J.I., Huang, Z. J. & Kepecs A.. Nature (2013) 20:503(7477):521–524
Distinct behavioural and network functions of two interneuron classes in prefrontal cortex
Kvitsiani, D., Ranade, S., Hangya, B., Tanaguchi, H., Huang, Z. J. & Kepecs A.. Nature (2013) 20;498(7454):363-6
Neuromodulatory Systems
How do neuromodulators like dopamine and acetylcholine influence behavior and mental health?
Neuromodulators can reconfigure circuit operations; we are focusing on the cholinergic basal forebrain and midbrain dopamine systems. Our research explores the computations of neuromodulatory systems, focusing on the cholinergic basal forebrain and midbrain dopamine systems. Recent studies have expanded into the modularity of the midbrain dopamine system and its coordination with the cholinergic system.
We investigated how elevated dopamine levels contribute to high-confidence false perceptions, offering insights into the neural mechanisms underlying psychotic disorders. This work demonstrates dopamine’s causal role in hallucination-like perception (Schmack et al., 2021, Science).
Currently we are dissecting the functions of striatal region-specific roles of midbrain dopamine and probing the dopamine in the context of psychosis and Parkinson’s disease.
Selected Publications
A neuro-immune circuit mediates cancer cachexia-associated apathy
S. Starosta*, A. Zhu*, M. Ferrer Gonzales, J. Hou, Q. Chevy, F. Lucantonio, F. Zhang, R. Munoz-Castaneda, M. Bergstrom, M. Wulf, S. Evans, A. Siebels, A. Kravitz, P. Osten, T. Janowitz, M. Pignatelli* , A. Kepecs*. (2023)
Striatal dopamine mediates hallucination-like perception in mice
Schmack, K., M. Bosc, T. Ott, J. F. Sturgill, Kepecs A. Science (2021) Apr 2;372(6537):eabf4740
DOI
Midbrain Dopamine Neurons Signal Belief in Choice Accuracy during a Perceptual Decision
Lak, A., Nomoto, K., Keramati, M., Sakagami, M. & Kepecs A.. Current Biology (2017) Volume 27, Issue 6p821-832
Computational Psychiatry
Can we objectively diagnose psychiatric conditions and map them across species to improve treatments?
We developed objective measures for subjective behaviors like confidence and apathy, bridging human experiences with quantitative metrics. By creating computational-behavioral frameworks, we have modeled psychiatric phenomena across species, facilitating translational research. For instance, we operationalized apathy—a dimension of depression—as effort sensitivity, a measurable parameter across species. We are expanding our quantitative behavioral approach to develop objective diagnostics and animal models, addressing critical challenges in psychiatry.
Selected Publications
Computational validity: using computation to translate behaviours across species
Redish AD, Kepecs A, Anderson LM, Calvin OL, Grissom NM, Haynos AF, Heilbronner SR, Herman AB, Jacob S, Ma S, Vilares I.. Philosophical Transactions of the Royal Society B. (2022) 2022 Feb 14;377(1844):20200525
Apparent sunk cost effect in rational agents
Ott T, P Masset, TS Gouvêa, Kepecs A. Science Advances (2022) 8(6):eabi7004
Computational Psychiatry Across Species to Study the Biology of Hallucinations
Schmack K, Ott T, Kepecs A.. JAMA psychiatry (2022) Jan 1;79(1):75-6
PDF
DOI
Striatal dopamine mediates hallucination-like perception in mice
Schmack, K., M. Bosc, T. Ott, J. F. Sturgill, Kepecs A. Science (2021) Apr 2;372(6537):eabf4740
DOI
Signatures of a statistical computation in the human sense, of confidence
Sanders, J.I., Hangya, B. & Kepecs A.. Neuron 90(3):499-506 (2016)
Neuro-Immune Interactions
What role does the brain play in immunology and diseases like cancer and autoimmune disorders?
We initiated research exploring brain-body interactions, focusing on how the brain communicates with the immune system. We identified a circuit by which cancer-induced inflammation leads to fatigue and depressive symptoms, providing insights into chronic inflammation’s impact on behavior (Starosta et al., under review). Our studies mapped connections from sympathetic nerves to breast tumors, demonstrating how sympathetic activation increases tumor growth (Monje et al., 2020, Cell). We are also investigating rheumatoid arthritis and endometriosis to understand neuro-immune mechanisms affecting behavior and disease.
Selected Publications
A neuro-immune circuit mediates cancer cachexia-associated apathy
S. Starosta*, A. Zhu*, M. Ferrer Gonzales, J. Hou, Q. Chevy, F. Lucantonio, F. Zhang, R. Munoz-Castaneda, M. Bergstrom, M. Wulf, S. Evans, A. Siebels, A. Kravitz, P. Osten, T. Janowitz, M. Pignatelli* , A. Kepecs*. (2023)
Roadmap for the Emerging Field of Cancer Neuroscience
Monje M, Borniger JC, D'Silva NJ, Deneen B, Dirks PB, Fattahi F, Frenette PS, Garzia L, Gutmann DH, Hanahan D, Hervey-Jumper SL, Hondermarck H, Hurov JB, Kepecs A, Knox SM, Lloyd AC, Magnon C, Saloman JL, Segal RA, Sloan EK, Sun X, Taylor MD, Tracey KJ, Trotman LC, Tuveson DA, Wang TC, White RA, Winkler F.. Cell (2020) Apr 16;181(2):219-222
Neuro-Inspired Artificial Intelligence
Can insights from neural circuits bridge critical gaps in artificial intelligence?
We are developing neuro-AI approaches to integrate biologically-inspired confidence assessments into AI architectures, addressing limitations in current systems. By applying computational models to decode complex neural data and understand behavior, we aim to enhance AI systems with capabilities reflecting cognitive processes found in the brain.
Selected Publications
R-learning in actor-critic model offers a biologically relevant mechanism for sequential decision-making
Shuvaev, S., Starosta, S., Kvitsiani, D., Kepecs, A., & Koulakov, A.. Advances in neural information processing systems (2020) 33, 18872-18882
Advancing Neuroscience with Technology
What technological innovations can expand our ability to probe neural circuits and brain-body physiology?
Technology is driving neurobiology into uncharted territories, revealing and altering brain circuits like never before. In collaboration with others and through our own efforts, we’re constantly exploring what new techniques can advance brain research.
Working with Michal Lipson’s group, we developed a nanophotonics probe, a reconfigurable optical interface that enables high-density neural stimulation in freely moving rodents (Mohanty et al., 2020). With Song Hu’s team, we are creating an optical fiber technique capable of stimulating over 1,000 sites with a single fiber. A persistent challenge in unbiased neural targeting is the tropism of viruses—how specific viruses preferentially infect certain cell types. To address this, we improved viral tracing methods for the CAV2 retrograde virus (Li et al., 2018), and we continue to explore new approaches to expand the frontiers of neurotechnology.
Selected Publications
Imaging of dendrites and sparse interneuronal networks with 3D random access microscopy
B. Rózsa, Z Szadai, L. Judák, B. Chiovini, G. Juhász ... A Kepecs. Optics and the Brain (2023) BW3B. 6
Monosynaptic restriction of the anterograde herpes simplex virus strain H129 for neural circuit tracing
KB Fischer, HK Collins, Y Pang, DS Roy, S Zhang, Feng, G, A Kepecs, Callaway EM. Journal of Comparative Neurology (2023)
Reconfigurable nanophotonic silicon probes for sub-millisecond deep-brain optical stimulation
Mohanty, A, Li, Q, Tadayon, MA, Bhatt, G, Shim, E, Ji X, Cardenas, J. Miller, SA, Kepecs, A* and Lipson, M*. Nat Biomed Eng. (2020) Feb;4(2):223-231. doi: 10.1038/s41551-020-0516-y
A viral receptor complementation strategy to overcome CAV-2 tropism for efficient retrograde targeting of neurons
Li, S, Vaughan A, J.F. Sturgill & Kepecs A. Neuron (2018) 98(5):905-917.e5